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Pull requests: scverse/scvi-tools

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Pull requests list

[pre-commit.ci] pre-commit autoupdate
#3630 opened Dec 1, 2025 by pre-commit-ci bot Loading…
1
Fix: batch size setting problem in ContrastiveVI on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3629 opened Nov 30, 2025 by ori-kron-wis Loading…
1
@ori-kron-wis
2
Fix: loading a model with adata=None and adata not exists on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3628 opened Nov 30, 2025 by ori-kron-wis Loading…
@ori-kron-wis
3
fix: use the modality name and not hard coded "rna" or "atac" in multivi on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3622 opened Nov 26, 2025 by ori-kron-wis • Draft
@ori-kron-wis
1
feat: Adding support for Annbatch custom_dataloader PR 2932 on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3620 opened Nov 25, 2025 by ori-kron-wis • Draft
@ori-kron-wis
1
feat: add differential abundance for scvi-tools models on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3618 opened Nov 24, 2025 by lordy5 • Draft
2
fix: loading mechanism for new mrvi on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3615 opened Nov 23, 2025 by ori-kron-wis Loading…
@ori-kron-wis
1
refactor: Use scverse template on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3607 opened Nov 18, 2025 by ori-kron-wis Loading…
1
@ori-kron-wis
2
feat: Support for MLX in scvi model macos tests mps on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3598 opened Nov 12, 2025 by ori-kron-wis Loading…
1
@ori-kron-wis
2
Model: DiagVI (new)
#3575 opened Oct 27, 2025 by ori-kron-wis Loading…
3
model: SENAVAE
#3571 opened Oct 22, 2025 by ori-kron-wis Loading…
8
build: Adding support for python3.14 [WIP] on-merge: backport to 1.4.x on-merge: backport to 1.4.x
#3563 opened Oct 20, 2025 by ori-kron-wis Loading…
@ori-kron-wis
1
Fixes to pyro model initialisation & sampling [WIP] P1
#2695 opened Apr 7, 2024 by vitkl Loading…
@martinkim0
9
ProTip! Filter pull requests by the default branch with base:main.