red_abalone

This is where I store information pertaining to the red abalone reference transcriptome I am assembling

Name		Name	Last commit message	Last commit date
DESeq2/Female		DESeq2/Female
HISAT2		HISAT2
10_April_2018_male_assembly_XSEDE_with Jeff		10_April_2018_male_assembly_XSEDE_with Jeff
10_Sept_2017_postdiginorm_filter_females_lanes_456		10_Sept_2017_postdiginorm_filter_females_lanes_456
11_Sept_2017_postesophagus_interleave_lane_6		11_Sept_2017_postesophagus_interleave_lane_6
12_April_2018_developmental_assembly_xsede		12_April_2018_developmental_assembly_xsede
12_December_2017_trinity_transrate_busco_female		12_December_2017_trinity_transrate_busco_female
13_April_2018_XSEDE_male_assembly_transrate		13_April_2018_XSEDE_male_assembly_transrate
14_Dec_2017_BUSCO_Titus		14_Dec_2017_BUSCO_Titus
14_Sept_2017_extract_PE_female_lanes_456		14_Sept_2017_extract_PE_female_lanes_456
14_Sept_2017_extract_PE_reads_developmental_lanes_456		14_Sept_2017_extract_PE_reads_developmental_lanes_456
14_Sept_2017_male_extract_PE_reads_post_abundfilt		14_Sept_2017_male_extract_PE_reads_post_abundfilt
14_sept_2017_split_PE_development_lanes_456		14_sept_2017_split_PE_development_lanes_456
16_April_2018_male_assembly_transrate		16_April_2018_male_assembly_transrate
17_April_2018_male_BUSCO		17_April_2018_male_BUSCO
18_April_2018_male_BUSCO		18_April_2018_male_BUSCO
18_Sept_2017_Post-Abundace_filtering_compression_development		18_Sept_2017_Post-Abundace_filtering_compression_development
18_Sept_2017_compress_PE_post-digi_abundance_female		18_Sept_2017_compress_PE_post-digi_abundance_female
18_Sept_2017_compress_post-digi_abundance_male		18_Sept_2017_compress_post-digi_abundance_male
18_Sept_2017_orphan_zip_post-abundance_filter		18_Sept_2017_orphan_zip_post-abundance_filter
18_Sept_2017_split_PE_development		18_Sept_2017_split_PE_development
18_Sept_2017_split_PE_female		18_Sept_2017_split_PE_female
18_Sept_2017_split_PE_male		18_Sept_2017_split_PE_male
18_Sept_2017_zip_orphans_female		18_Sept_2017_zip_orphans_female
18_Sept_2017_zip_orphans_male		18_Sept_2017_zip_orphans_male
19_April_2018_developmental_transrate		19_April_2018_developmental_transrate
19_April_2018_male_BUSCO		19_April_2018_male_BUSCO
1_May_2018_jupyter_notebook		1_May_2018_jupyter_notebook
23_April_2018_BUSCO_Lisa		23_April_2018_BUSCO_Lisa
24_April_2018__development_transrate		24_April_2018__development_transrate
24_April_2018_developmental _BUSCO		24_April_2018_developmental _BUSCO
24_April_2018_male_transrate		24_April_2018_male_transrate
24_April_2018_male_transrate_sbatch		24_April_2018_male_transrate_sbatch
8_Sept_2017_Male_Interleave_Lane_4		8_Sept_2017_Male_Interleave_Lane_4
8_Sept_2017_diginorm_lane_456_female		8_Sept_2017_diginorm_lane_456_female
8_Sept_2017_diginorm_lanes456_male		8_Sept_2017_diginorm_lanes456_male
8_Sept_2017_female_lane_6_interleave		8_Sept_2017_female_lane_6_interleave
8_Sept_2017_interleave_eggstuff_lane_4		8_Sept_2017_interleave_eggstuff_lane_4
8_Sept_2017_interleave_extrastuff_lane_4		8_Sept_2017_interleave_extrastuff_lane_4
8_Sept_2017_interleave_lane_4_dev		8_Sept_2017_interleave_lane_4_dev
8_Sept_2017_interleave_lane_5_development		8_Sept_2017_interleave_lane_5_development
8_Sept_2017_interleave_lane_6_development		8_Sept_2017_interleave_lane_6_development
8_Sept_2017_interleave_male_lane_5		8_Sept_2017_interleave_male_lane_5
8_Sept_2017_interleave_male_lane_6		8_Sept_2017_interleave_male_lane_6
8_Sept_2017_postdigifilter_female_lanes_45		8_Sept_2017_postdigifilter_female_lanes_45
8_Sept_2017_trimmomatic_eggstuff_lane_4		8_Sept_2017_trimmomatic_eggstuff_lane_4
9_Sept_2017_postdigi_filter_development_lanes_456		9_Sept_2017_postdigi_filter_development_lanes_456
9_Sept_2017_postdigi_male_lanes_456		9_Sept_2017_postdigi_male_lanes_456
Abalone Selfie.JPG		Abalone Selfie.JPG
BUSCO_10_Jan_2018_with_Luiz		BUSCO_10_Jan_2018_with_Luiz
BUSCO_12_Dec_2017		BUSCO_12_Dec_2017
BUSCO_13_Dec_2017		BUSCO_13_Dec_2017
DESeq2_Female		DESeq2_Female
DESeq_2_Male_Picasso		DESeq_2_Male_Picasso
MAD_diginorm_Sept_6_2017_Luiz_Sweet_Abalone_Gods_This_WORKED		MAD_diginorm_Sept_6_2017_Luiz_Sweet_Abalone_Gods_This_WORKED
NCBI upload party		NCBI upload party
NCBI_files		NCBI_files
README.md		README.md
Raw Sequence Data to NCBI		Raw Sequence Data to NCBI
RawSequenceDatatoTRIMFastQC		RawSequenceDatatoTRIMFastQC
XSEDE_Male_10_April_2018_slurm		XSEDE_Male_10_April_2018_slurm
_development_stages_pipeline		_development_stages_pipeline
at_digi_again		at_digi_again
cyberduck_down		cyberduck_down
development_Trinity		development_Trinity
developmental assembly to XCEDE_8_March_2018		developmental assembly to XCEDE_8_March_2018
digi_lisa_-u		digi_lisa_-u
digi_with_lisa		digi_with_lisa
diginorm		diginorm
diginorm_31_7_2017		diginorm_31_7_2017
diginorm_again		diginorm_again
diginorm_error_empty_orphans		diginorm_error_empty_orphans
diginorm_lane456_female		diginorm_lane456_female
diginorm_lane4_lane5_female		diginorm_lane4_lane5_female
diginorm_orphan_error		diginorm_orphan_error
diginorm_saga		diginorm_saga
diginorm_sequel		diginorm_sequel
lane_5_female_diginorm		lane_5_female_diginorm
male_assembly_xsede_19_March_2018		male_assembly_xsede_19_March_2018
male_assembly_xsede_3_April_2018		male_assembly_xsede_3_April_2018
male_assembly_xsede_5_April_2018		male_assembly_xsede_5_April_2018
male_asssembly_XSEDE_5_April_2018		male_asssembly_XSEDE_5_April_2018
orphansoftlink_diginorm_again		orphansoftlink_diginorm_again
post-diginormlane4lane5female.Rmd		post-diginormlane4lane5female.Rmd
post-diginormlane4lane5female.html		post-diginormlane4lane5female.html
post-diginormlane4lane5female.pdf		post-diginormlane4lane5female.pdf
red_abalone_reference_transcriptome_pipeline_female_tissues		red_abalone_reference_transcriptome_pipeline_female_tissues
reference_transcriptome_NCBI		reference_transcriptome_NCBI
salmon		salmon
splice_gene_trans_map_post-trinity		splice_gene_trans_map_post-trinity
transcriptome_TransRate_BUSCO_dammit_Salmon_DESeq2O		transcriptome_TransRate_BUSCO_dammit_Salmon_DESeq2O
transfer_DESeq2_quant_files_to_local_computer		transfer_DESeq2_quant_files_to_local_computer

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