Issues

• KeyError: 'year' in parse_pubmed_xml when no date element contains a year

  bug
  titipata/pubmed_parser#176 · Filter by author KadenMc opened on Mar 4, 2026

• caption only defined in conditional branch for parse_pubmed_caption

  bug
  titipata/pubmed_parser#175 · Filter by author KadenMc opened on Mar 4, 2026

• parse_pubmed_paragraph does not propagate parent section titles for nested <sec>

  titipata/pubmed_parser#174 · Filter by author wzhou122 opened on Jan 9, 2026
  1

• New update/file format for pubmed bulk xml files

  titipata/pubmed_parser#173 · Filter by author seandavi opened on Oct 11, 2025

• Tables are ignored when they are not inside a <Body> tag.

  bug
  titipata/pubmed_parser#171 · Filter by author hdabaghyan opened on Oct 1, 2025

• Unclear documentation in Parse MEDLINE XML - delete = True or False?

  titipata/pubmed_parser#165 · Filter by author callebalik opened on May 13, 2025
  2

• Syntax issues when parsing pubmed baseline xml

  bug
  titipata/pubmed_parser#161 · Filter by author robinweisenburger opened on Oct 28, 2024

• AttributeError: 'NoneType' object has no attribute 'getchildren'

  bug
  titipata/pubmed_parser#151 · Filter by author qm-intel opened on Aug 11, 2024
  1

• AttributeError: 'NoneType' object has no attribute 'text' when using parse_pubmed_caption

  bug
  titipata/pubmed_parser#150 · Filter by author qm-intel opened on Aug 11, 2024
  1

• How to extract the figures' inline mentions from the artcile xml file?

  question
  titipata/pubmed_parser#149 · Filter by author qm-intel opened on Aug 10, 2024
  2

• Handling of non-ASCII / unicode characters

  titipata/pubmed_parser#140 · Filter by author Michael-E-Rose opened on May 16, 2024

• CALL FOR MAINTAINER/CONTRIBUTOR FOR PUBMED_PARSER

  enhancement
  titipata/pubmed_parser#128 · Filter by author titipata opened on Oct 12, 2023
  7

• Bug report - XML citations from website

  bug
  titipata/pubmed_parser#127 · Filter by author chungimungi opened on Oct 11, 2023
  1

• parse_pubmed_paragraph() function seems to miss some paragraphs sometimes.

  bug
  titipata/pubmed_parser#111 · Filter by author zhao-zy15 opened on Jan 7, 2022

• All of PubMed XML was updated to follow the MEDLINE XML format.

  enhancement
  titipata/pubmed_parser#109 · Filter by author MattYoon opened on Dec 26, 2021

• Error using parse_pubmed_xml

  bughelp wanted
  titipata/pubmed_parser#95 · Filter by author sublimotion opened on Oct 22, 2020
  5

• Return table in format that can convert to multilayer dataframe

  help wanted
  titipata/pubmed_parser#42 · Filter by author titipata opened on Apr 1, 2017

• PMID to PMC API from Medline cannot convert all provided PMID

  enhancement
  titipata/pubmed_parser#37 · Filter by author titipata opened on Dec 29, 2016
  6