"猛犸杯"-宏基因组分析流程
Reproducible hybrid metagenomics with MAG recovery and strain-level resolution
A simpler version of atavide that relies only on slurm or PBS scripts. Some of the settings are specific for our compute resources
Shotgun metagenomic sequences processing pipeline
This is a python package for analysis of metagenomics data.
A parallelized HPC workflow for shotgun metagenomic data that uses KneadData for quality control, Kraken2 for classification, and Bracken for generating taxonomic profiles.
A reproducible, modular Snakemake workflow designed to process, assemble, and analyze Illumina paired-end reads from host-associated metagenomic samples
An automated metagenomics pipeline. Runs in parallel with modular components. All changes are made in the config file. Directory structure auto populates. Dependency is a .txt with list of SRA Accession IDs.
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