Generative Routing Pyramids

Official implementation of Unsupervised Learning of Cell Instances with Generative Routing Pyramids (arXiv).

Install

Install with pip:

pip install git+https://github.com/weigertlab/routing-pyramids.git

The visualization scripts require optional dependencies from the [analysis] extra.

Development installation requires uv:

# in cloned repository
uv sync --extra analysis

Examples

We provide example scripts for:

• training
• prediction
• visualizing pyramidal routing and feature maps
• latent analysis and instance generation

Also see the dataset documentation.